Skin Pigmentation15q21.1

rs1426654 - The Strongest Known Skin Color Gene

Gene: SLC24A5

rs1426654 (A111T) in SLC24A5 is the single largest-effect variant for human skin pigmentation. The derived A allele reduces melanin production and is the primary genetic basis for lighter skin in European and South Asian populations.

Genotype Interpretations

AA~99% (European), ~85% (South Asian)

Lighter skin - derived European variant, nearly fixed in Europe

AGRare (admixed populations)

Intermediate pigmentation

GG~97% (African), ~99% (East Asian)

Ancestral genotype - full melanin production

Population Context

This is the most population-differentiated SNP in the entire human genome (Fst > 0.9 between EUR and AFR). The A allele rose to near-fixation in Europe within the last ~10,000 years, one of the strongest signals of natural selection in humans.

Clinical Relevance

No pathological significance. The derived allele is associated with increased vitamin D synthesis at higher latitudes but reduced UV protection.

Sources

  • [1] Lamason RL et al. (2005) Science 310:1782-6
  • [2] Norton HL et al. (2007) Mol Biol Evol 24:710-22

What's your rs1426654 genotype?

Upload your 23andMe or AncestryDNA raw data to instantly see your result for rs1426654 and 200+ other variants. 100% private, processed in your browser.

Check My DNA